Biological Population Statistics 2008

Materials online

Streaming Video

Handouts and Lecture notes

1. Syllabus

2. Simple Linear Regression review (see EXST7005 notes)

3. Lack of Fit and Analysis of Covariance

4. Lack of Fit Description

5. Depletion Models

6. Depletion Model examples

7. Mortality

8. Mortality example

9. Morphometric Relationships

10. Mortphometric examples

11. Schaeffer Model

12. Schaeffer Model examples

13. Recruitment models

14. Recruitment examples

15. Recruitment (Ricker appendix)

16. Review for exam – not recorded (Exam from 2004)

17. Growth Lecture 1, Lecture 2, Lecture 3, Random coefficients

18. Beverton Holt Model

19. Cohort Analysis

20. Monte Carlo Modeling with Growth Model Example

21. Simulation Model with Lotka-Volterra

22. Simulation Model (Part 2, UNRECORDED)

23. Simulation Model Example (Lobster - Mussel)

24. Species Diversity

25. Diversity program with equations SAS program TXT file

Homework Assignments

1. Shark morphometric assignment (PDF) SAS Program (SAS and TXT) Data set (TXT)

2. Schaeffer model assignment (PDF) SAS Program (SAS and TXT) Data set (TXT)

3. Recruitment models (PDF) SAS Program (SAS and TXT) Data set is contained in the SAS program

4. Growth models (PDF) SAS Program (SAS and TXT) Data set (CSV)

Materials for 2004

Syllabus

Spring Semester 2004  

1. Mortality
2. Flies
3. Depletion
4. Bass
5. Quintay
6. Stat review for Morph
7. Morphometrics
8. Review and Recruitment  (PRZ) PDF Streaming Video
9. Recruitment (PDF) Streaming Video (Part 1) (Part 2)
10. Recruitment Fits PRZ PDF
11. Schaeffer Model (Streaming video) (Video Part 2 )
12. Lack of Fit (Video)
13. ANCOVA (Video)
14.  Growth (Video)
15. Equations on EXAM
16. Growth (part 2)
17. Growth (additional notes) (Streaming Video)
18. Beverton-Holt (Streaming video Part 1) (Part 2)
19. Cohort Analysis (Streaming 1) (Streaming 2)
20. Simulations   (Streaming 1 failed)   (Streaming 2) 
21. More simulations
    

Handouts
Program to generate letter codes from numbers

Length - Scale length relationship

Other Morphometric relationships and Length-Weight  (some HTML from SAS)

Recruitment Handout Streaming video

Schaeffer Model Handout (Streamingvideo)

LOF and ANCOVA handout (Streamingvideo)

Growth example (Streaming Video)

Cohort Analysis

Monte Carlo Example

Pred/Prey in SAS

Mussel Example

Assignments 2004

Shark Assignment Program & Data

Recruitment Assignment  & Data

Growth Assignment, Program & Data

Spring Semester 2002

Assignments

Spring Semester 2002

Schaeffer model program and sample datasets (Lobster, Halibut)

Alligator dataset.  Note: independent estimates (primarily nest counts) put the number of gators in the tens of thousands, max.

Growth program used for SAS handout, complete program (more than you want, probably). CiscoGro

Herringdata set for Growth studies.  You must change input, this data set has only age and size.  Set WT=1 if you do not want to delete it throughout the program.  I found a version that is set up for Halibut with weight already set to 1, but it does not fit as many models.  You may wish to used GROWTH.SAS

Official Growth Assignment

James P. Geaghan

March 29, 2004